Antimony in PDB 6xlj: Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 4-Nt Rna Transcript (Ecmrr-Rpitc-4NT)

All present enzymatic activity of Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 4-Nt Rna Transcript (Ecmrr-Rpitc-4NT):
2.7.7.6;

The structure of Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 4-Nt Rna Transcript (Ecmrr-Rpitc-4NT) also contains other interesting chemical elements:

Zinc	(Zn)	2 atoms
Magnesium	(Mg)	2 atoms

The binding sites of Antimony atom in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 4-Nt Rna Transcript (Ecmrr-Rpitc-4NT) (pdb code 6xlj). This binding sites where shown within 5.0 Angstroms radius around Antimony atom.
In total 3 binding sites of Antimony where determined in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 4-Nt Rna Transcript (Ecmrr-Rpitc-4NT), PDB code: 6xlj:
Jump to Antimony binding site number: 1; 2; 3;

Antimony binding site 1 out of 3 in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 4-Nt Rna Transcript (Ecmrr-Rpitc-4NT)


Mono view


Stereo pair view

A full contact list of Antimony with other atoms in the Sb binding site number 1 of Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 4-Nt Rna Transcript (Ecmrr-Rpitc-4NT) within 5.0Å range: probe atom residue distance (Å) B Occ C:Sb1402 b:99.2 occ:1.00 SB C:1181402 0.0 99.2 1.0 C1C C:1181402 2.1 99.2 1.0 C1A C:1181402 2.1 99.2 1.0 C1D C:1181402 2.1 99.2 1.0 C1B C:1181402 2.1 99.2 1.0 C2B C:1181402 3.0 99.2 1.0 C2D C:1181402 3.0 99.2 1.0 C2C C:1181402 3.0 99.2 1.0 C6C C:1181402 3.0 99.2 1.0 C2A C:1181402 3.0 99.2 1.0 C6A C:1181402 3.1 99.2 1.0 C6D C:1181402 3.1 99.2 1.0 C6B C:1181402 3.1 99.2 1.0 O C:GLU541 3.5 88.5 1.0 C3B C:1181402 4.3 99.2 1.0 C3C C:1181402 4.3 99.2 1.0 C3A C:1181402 4.3 99.2 1.0 C5C C:1181402 4.3 99.2 1.0 C3D C:1181402 4.4 99.2 1.0 C5A C:1181402 4.4 99.2 1.0 C5D C:1181402 4.4 99.2 1.0 C5B C:1181402 4.4 99.2 1.0 C C:GLU541 4.5 88.5 1.0 C2' T:DG11 4.8 85.7 1.0 CA C:GLU541 4.8 88.5 1.0 C4C C:1181402 4.9 99.2 1.0 C4A C:1181402 4.9 99.2 1.0 C4B C:1181402 4.9 99.2 1.0 C4D C:1181402 4.9 99.2 1.0 N3 T:DG11 4.9 85.7 1.0 CB C:GLU541 5.0 88.5 1.0

Antimony binding site 2 out of 3 in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 4-Nt Rna Transcript (Ecmrr-Rpitc-4NT)


Mono view


Stereo pair view

A full contact list of Antimony with other atoms in the Sb binding site number 2 of Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 4-Nt Rna Transcript (Ecmrr-Rpitc-4NT) within 5.0Å range: probe atom residue distance (Å) B Occ G:Sb302 b:219.3 occ:1.00 SB G:118302 0.0 219.3 1.0 C1B G:118302 2.1 219.3 1.0 C1D G:118302 2.1 219.3 1.0 C1A G:118302 2.1 219.3 1.0 C1C G:118302 2.1 219.3 1.0 C2B G:118302 3.0 219.3 1.0 C2D G:118302 3.0 219.3 1.0 C2A G:118302 3.1 219.3 1.0 C6A G:118302 3.1 219.3 1.0 C2C G:118302 3.1 219.3 1.0 C6C G:118302 3.1 219.3 1.0 C6D G:118302 3.1 219.3 1.0 C6B G:118302 3.1 219.3 1.0 CE3 G:TRP250 4.0 213.2 1.0 C3B G:118302 4.3 219.3 1.0 CD2 G:TRP250 4.3 213.2 1.0 C3D G:118302 4.4 219.3 1.0 C3A G:118302 4.4 219.3 1.0 C5A G:118302 4.4 219.3 1.0 C3C G:118302 4.4 219.3 1.0 C5D G:118302 4.4 219.3 1.0 C5C G:118302 4.4 219.3 1.0 C5B G:118302 4.4 219.3 1.0 CZ3 G:TRP250 4.6 213.2 1.0 CG G:TRP250 4.6 213.2 1.0 CB G:TRP250 4.6 213.2 1.0 C4B G:118302 4.9 219.3 1.0 C4D G:118302 4.9 219.3 1.0 C4A G:118302 4.9 219.3 1.0 C4C G:118302 4.9 219.3 1.0

Antimony binding site 3 out of 3 in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 4-Nt Rna Transcript (Ecmrr-Rpitc-4NT)


Mono view


Stereo pair view

A full contact list of Antimony with other atoms in the Sb binding site number 3 of Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 4-Nt Rna Transcript (Ecmrr-Rpitc-4NT) within 5.0Å range: probe atom residue distance (Å) B Occ H:Sb302 b:205.8 occ:1.00 SB H:118302 0.0 205.8 1.0 C1B H:118302 2.1 205.8 1.0 C1C H:118302 2.1 205.8 1.0 C1D H:118302 2.1 205.8 1.0 C1A H:118302 2.1 205.8 1.0 C2B H:118302 3.0 205.8 1.0 C2C H:118302 3.1 205.8 1.0 C2D H:118302 3.1 205.8 1.0 C2A H:118302 3.1 205.8 1.0 C6D H:118302 3.1 205.8 1.0 C6C H:118302 3.1 205.8 1.0 C6A H:118302 3.1 205.8 1.0 C6B H:118302 3.1 205.8 1.0 C3B H:118302 4.3 205.8 1.0 C3D H:118302 4.4 205.8 1.0 C3C H:118302 4.4 205.8 1.0 C3A H:118302 4.4 205.8 1.0 C5D H:118302 4.4 205.8 1.0 C5A H:118302 4.4 205.8 1.0 C5C H:118302 4.4 205.8 1.0 C5B H:118302 4.4 205.8 1.0 CD2 H:TRP250 4.6 198.7 1.0 CG H:TRP250 4.6 198.7 1.0 CD1 H:TRP250 4.8 198.7 1.0 CE2 H:TRP250 4.8 198.7 1.0 C4B H:118302 4.9 205.8 1.0 C4D H:118302 4.9 205.8 1.0 NE1 H:TRP250 4.9 198.7 1.0 C4C H:118302 4.9 205.8 1.0 C4A H:118302 4.9 205.8 1.0 CE3 H:TRP250 5.0 198.7 1.0 CB H:TRP250 5.0 198.7 1.0

Y.Yang, C.Liu, W.Shi, D.G.Schatz, Y.Hu, B.Liu. Structural Visualization of Bacterial Multidrug-Activated Transcription To Be Published.