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Antimony in PDB 6xl9: Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT)

Enzymatic activity of Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT)

All present enzymatic activity of Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT):
2.7.7.6;

Other elements in 6xl9:

The structure of Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT) also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Zinc (Zn) 2 atoms

Antimony Binding Sites:

The binding sites of Antimony atom in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT) (pdb code 6xl9). This binding sites where shown within 5.0 Angstroms radius around Antimony atom.
In total 3 binding sites of Antimony where determined in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT), PDB code: 6xl9:
Jump to Antimony binding site number: 1; 2; 3;

Antimony binding site 1 out of 3 in 6xl9

Go back to Antimony Binding Sites List in 6xl9
Antimony binding site 1 out of 3 in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT)


Mono view


Stereo pair view

A full contact list of Antimony with other atoms in the Sb binding site number 1 of Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Sb701

b:113.7
occ:1.00
SB F:118701 0.0 113.7 1.0
C1A F:118701 2.1 113.7 1.0
C1B F:118701 2.1 113.7 1.0
C1D F:118701 2.1 113.7 1.0
C1C F:118701 2.1 113.7 1.0
C2B F:118701 3.0 113.7 1.0
C6A F:118701 3.1 113.7 1.0
C6C F:118701 3.1 113.7 1.0
C6D F:118701 3.1 113.7 1.0
C2A F:118701 3.1 113.7 1.0
C2D F:118701 3.1 113.7 1.0
C2C F:118701 3.1 113.7 1.0
C6B F:118701 3.1 113.7 1.0
C3B F:118701 4.3 113.7 1.0
C3A F:118701 4.4 113.7 1.0
C5A F:118701 4.4 113.7 1.0
C5C F:118701 4.4 113.7 1.0
C5D F:118701 4.4 113.7 1.0
C3D F:118701 4.4 113.7 1.0
C3C F:118701 4.4 113.7 1.0
C5B F:118701 4.4 113.7 1.0
CZ3 F:TRP433 4.7 91.4 1.0
CD F:ARG436 4.8 86.3 1.0
NE F:ARG436 4.8 86.3 1.0
C4A F:118701 4.9 113.7 1.0
C4B F:118701 4.9 113.7 1.0
C4C F:118701 4.9 113.7 1.0
C4D F:118701 4.9 113.7 1.0

Antimony binding site 2 out of 3 in 6xl9

Go back to Antimony Binding Sites List in 6xl9
Antimony binding site 2 out of 3 in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT)


Mono view


Stereo pair view

A full contact list of Antimony with other atoms in the Sb binding site number 2 of Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Sb301

b:200.7
occ:1.00
SB G:118301 0.0 200.7 1.0
C1A G:118301 2.1 200.7 1.0
C1B G:118301 2.1 200.7 1.0
C1C G:118301 2.1 200.7 1.0
C1D G:118301 2.1 200.7 1.0
C2B G:118301 3.0 200.7 1.0
C2A G:118301 3.0 200.7 1.0
C2C G:118301 3.1 200.7 1.0
C2D G:118301 3.1 200.7 1.0
C6D G:118301 3.1 200.7 1.0
C6C G:118301 3.1 200.7 1.0
C6A G:118301 3.1 200.7 1.0
C6B G:118301 3.1 200.7 1.0
C3B G:118301 4.3 200.7 1.0
C3A G:118301 4.4 200.7 1.0
C3C G:118301 4.4 200.7 1.0
C3D G:118301 4.4 200.7 1.0
C5D G:118301 4.4 200.7 1.0
C5C G:118301 4.4 200.7 1.0
C5A G:118301 4.4 200.7 1.0
C5B G:118301 4.4 200.7 1.0
CG G:TRP250 4.8 193.4 1.0
CD2 G:TRP250 4.8 193.4 1.0
C4B G:118301 4.9 200.7 1.0
C4C G:118301 4.9 200.7 1.0
C4A G:118301 4.9 200.7 1.0
C4D G:118301 4.9 200.7 1.0

Antimony binding site 3 out of 3 in 6xl9

Go back to Antimony Binding Sites List in 6xl9
Antimony binding site 3 out of 3 in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT)


Mono view


Stereo pair view

A full contact list of Antimony with other atoms in the Sb binding site number 3 of Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Sb301

b:191.6
occ:1.00
SB H:118301 0.0 191.6 1.0
C1C H:118301 2.1 191.6 1.0
C1B H:118301 2.1 191.6 1.0
C1A H:118301 2.1 191.6 1.0
C1D H:118301 2.1 191.6 1.0
C2B H:118301 3.0 191.6 1.0
C2C H:118301 3.1 191.6 1.0
C6C H:118301 3.1 191.6 1.0
C2A H:118301 3.1 191.6 1.0
C2D H:118301 3.1 191.6 1.0
C6A H:118301 3.1 191.6 1.0
C6D H:118301 3.1 191.6 1.0
C6B H:118301 3.1 191.6 1.0
C3B H:118301 4.3 191.6 1.0
C5C H:118301 4.4 191.6 1.0
C3C H:118301 4.4 191.6 1.0
C3A H:118301 4.4 191.6 1.0
C5A H:118301 4.4 191.6 1.0
C3D H:118301 4.4 191.6 1.0
C5D H:118301 4.4 191.6 1.0
C5B H:118301 4.4 191.6 1.0
CE3 H:TRP250 4.6 180.1 1.0
C4C H:118301 4.9 191.6 1.0
C4B H:118301 4.9 191.6 1.0
C4A H:118301 4.9 191.6 1.0
C4D H:118301 4.9 191.6 1.0
CD2 H:TRP250 4.9 180.1 1.0
CZ3 H:TRP250 4.9 180.1 1.0

Reference:

Y.Yang, C.Liu, W.Shi, D.G.Schatz, Y.Hu, B.Liu. Structural Visualization of Bacterial Multidrug-Activated Transcription To Be Published.
Page generated: Sat Apr 17 17:14:17 2021

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