Antimony in PDB 6xl9: Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT)

All present enzymatic activity of Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT):
2.7.7.6;

The structure of Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT) also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Zinc	(Zn)	2 atoms

The binding sites of Antimony atom in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT) (pdb code 6xl9). This binding sites where shown within 5.0 Angstroms radius around Antimony atom.
In total 3 binding sites of Antimony where determined in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT), PDB code: 6xl9:
Jump to Antimony binding site number: 1; 2; 3;

Antimony binding site 1 out of 3 in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT)


Mono view


Stereo pair view

A full contact list of Antimony with other atoms in the Sb binding site number 1 of Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT) within 5.0Å range: probe atom residue distance (Å) B Occ F:Sb701 b:113.7 occ:1.00 SB F:118701 0.0 113.7 1.0 C1A F:118701 2.1 113.7 1.0 C1B F:118701 2.1 113.7 1.0 C1D F:118701 2.1 113.7 1.0 C1C F:118701 2.1 113.7 1.0 C2B F:118701 3.0 113.7 1.0 C6A F:118701 3.1 113.7 1.0 C6C F:118701 3.1 113.7 1.0 C6D F:118701 3.1 113.7 1.0 C2A F:118701 3.1 113.7 1.0 C2D F:118701 3.1 113.7 1.0 C2C F:118701 3.1 113.7 1.0 C6B F:118701 3.1 113.7 1.0 C3B F:118701 4.3 113.7 1.0 C3A F:118701 4.4 113.7 1.0 C5A F:118701 4.4 113.7 1.0 C5C F:118701 4.4 113.7 1.0 C5D F:118701 4.4 113.7 1.0 C3D F:118701 4.4 113.7 1.0 C3C F:118701 4.4 113.7 1.0 C5B F:118701 4.4 113.7 1.0 CZ3 F:TRP433 4.7 91.4 1.0 CD F:ARG436 4.8 86.3 1.0 NE F:ARG436 4.8 86.3 1.0 C4A F:118701 4.9 113.7 1.0 C4B F:118701 4.9 113.7 1.0 C4C F:118701 4.9 113.7 1.0 C4D F:118701 4.9 113.7 1.0

Antimony binding site 2 out of 3 in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT)


Mono view


Stereo pair view

A full contact list of Antimony with other atoms in the Sb binding site number 2 of Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT) within 5.0Å range: probe atom residue distance (Å) B Occ G:Sb301 b:200.7 occ:1.00 SB G:118301 0.0 200.7 1.0 C1A G:118301 2.1 200.7 1.0 C1B G:118301 2.1 200.7 1.0 C1C G:118301 2.1 200.7 1.0 C1D G:118301 2.1 200.7 1.0 C2B G:118301 3.0 200.7 1.0 C2A G:118301 3.0 200.7 1.0 C2C G:118301 3.1 200.7 1.0 C2D G:118301 3.1 200.7 1.0 C6D G:118301 3.1 200.7 1.0 C6C G:118301 3.1 200.7 1.0 C6A G:118301 3.1 200.7 1.0 C6B G:118301 3.1 200.7 1.0 C3B G:118301 4.3 200.7 1.0 C3A G:118301 4.4 200.7 1.0 C3C G:118301 4.4 200.7 1.0 C3D G:118301 4.4 200.7 1.0 C5D G:118301 4.4 200.7 1.0 C5C G:118301 4.4 200.7 1.0 C5A G:118301 4.4 200.7 1.0 C5B G:118301 4.4 200.7 1.0 CG G:TRP250 4.8 193.4 1.0 CD2 G:TRP250 4.8 193.4 1.0 C4B G:118301 4.9 200.7 1.0 C4C G:118301 4.9 200.7 1.0 C4A G:118301 4.9 200.7 1.0 C4D G:118301 4.9 200.7 1.0

Antimony binding site 3 out of 3 in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT)


Mono view


Stereo pair view

A full contact list of Antimony with other atoms in the Sb binding site number 3 of Cryo-Em Structure of Ecmrr-Rnap-Promoter Initial Transcribing Complex with 3-Nt Rna Transcript (Ecmrr-Rpitc-3NT) within 5.0Å range: probe atom residue distance (Å) B Occ H:Sb301 b:191.6 occ:1.00 SB H:118301 0.0 191.6 1.0 C1C H:118301 2.1 191.6 1.0 C1B H:118301 2.1 191.6 1.0 C1A H:118301 2.1 191.6 1.0 C1D H:118301 2.1 191.6 1.0 C2B H:118301 3.0 191.6 1.0 C2C H:118301 3.1 191.6 1.0 C6C H:118301 3.1 191.6 1.0 C2A H:118301 3.1 191.6 1.0 C2D H:118301 3.1 191.6 1.0 C6A H:118301 3.1 191.6 1.0 C6D H:118301 3.1 191.6 1.0 C6B H:118301 3.1 191.6 1.0 C3B H:118301 4.3 191.6 1.0 C5C H:118301 4.4 191.6 1.0 C3C H:118301 4.4 191.6 1.0 C3A H:118301 4.4 191.6 1.0 C5A H:118301 4.4 191.6 1.0 C3D H:118301 4.4 191.6 1.0 C5D H:118301 4.4 191.6 1.0 C5B H:118301 4.4 191.6 1.0 CE3 H:TRP250 4.6 180.1 1.0 C4C H:118301 4.9 191.6 1.0 C4B H:118301 4.9 191.6 1.0 C4A H:118301 4.9 191.6 1.0 C4D H:118301 4.9 191.6 1.0 CD2 H:TRP250 4.9 180.1 1.0 CZ3 H:TRP250 4.9 180.1 1.0

Y.Yang, C.Liu, W.Shi, D.G.Schatz, Y.Hu, B.Liu. Structural Visualization of Bacterial Multidrug-Activated Transcription To Be Published.