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Antimony in PDB 6xl5: Cryo-Em Structure of Ecmrr-Rnap-Promoter Open Complex (Ecmrr-Rpo)

Enzymatic activity of Cryo-Em Structure of Ecmrr-Rnap-Promoter Open Complex (Ecmrr-Rpo)

All present enzymatic activity of Cryo-Em Structure of Ecmrr-Rnap-Promoter Open Complex (Ecmrr-Rpo):
2.7.7.6;

Other elements in 6xl5:

The structure of Cryo-Em Structure of Ecmrr-Rnap-Promoter Open Complex (Ecmrr-Rpo) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 2 atoms

Antimony Binding Sites:

The binding sites of Antimony atom in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Open Complex (Ecmrr-Rpo) (pdb code 6xl5). This binding sites where shown within 5.0 Angstroms radius around Antimony atom.
In total 2 binding sites of Antimony where determined in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Open Complex (Ecmrr-Rpo), PDB code: 6xl5:
Jump to Antimony binding site number: 1; 2;

Antimony binding site 1 out of 2 in 6xl5

Go back to Antimony Binding Sites List in 6xl5
Antimony binding site 1 out of 2 in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Open Complex (Ecmrr-Rpo)


Mono view


Stereo pair view

A full contact list of Antimony with other atoms in the Sb binding site number 1 of Cryo-Em Structure of Ecmrr-Rnap-Promoter Open Complex (Ecmrr-Rpo) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Sb302

b:177.2
occ:1.00
SB G:118302 0.0 177.2 1.0
C1B G:118302 2.1 177.2 1.0
C1A G:118302 2.1 177.2 1.0
C1D G:118302 2.1 177.2 1.0
C1C G:118302 2.1 177.2 1.0
C2B G:118302 3.0 177.2 1.0
C2A G:118302 3.1 177.2 1.0
C6D G:118302 3.1 177.2 1.0
C2C G:118302 3.1 177.2 1.0
C6A G:118302 3.1 177.2 1.0
C2D G:118302 3.1 177.2 1.0
C6C G:118302 3.1 177.2 1.0
C6B G:118302 3.1 177.2 1.0
CD2 G:TRP250 4.3 170.7 1.0
C3B G:118302 4.3 177.2 1.0
C3A G:118302 4.4 177.2 1.0
C5D G:118302 4.4 177.2 1.0
C5A G:118302 4.4 177.2 1.0
C3D G:118302 4.4 177.2 1.0
C3C G:118302 4.4 177.2 1.0
C5C G:118302 4.4 177.2 1.0
CE3 G:TRP250 4.4 170.7 1.0
C5B G:118302 4.4 177.2 1.0
CG G:TRP250 4.6 170.7 1.0
CE2 G:TRP250 4.7 170.7 1.0
CZ3 G:TRP250 4.8 170.7 1.0
C4B G:118302 4.9 177.2 1.0
C4A G:118302 4.9 177.2 1.0
C4D G:118302 4.9 177.2 1.0
C4C G:118302 4.9 177.2 1.0
CB G:TRP250 5.0 170.7 1.0

Antimony binding site 2 out of 2 in 6xl5

Go back to Antimony Binding Sites List in 6xl5
Antimony binding site 2 out of 2 in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Open Complex (Ecmrr-Rpo)


Mono view


Stereo pair view

A full contact list of Antimony with other atoms in the Sb binding site number 2 of Cryo-Em Structure of Ecmrr-Rnap-Promoter Open Complex (Ecmrr-Rpo) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Sb302

b:164.7
occ:1.00
SB H:118302 0.0 164.7 1.0
C1B H:118302 2.1 164.7 1.0
C1D H:118302 2.1 164.7 1.0
C1C H:118302 2.1 164.7 1.0
C1A H:118302 2.1 164.7 1.0
C2B H:118302 3.0 164.7 1.0
C2C H:118302 3.1 164.7 1.0
C2D H:118302 3.1 164.7 1.0
C6D H:118302 3.1 164.7 1.0
C2A H:118302 3.1 164.7 1.0
C6A H:118302 3.1 164.7 1.0
C6C H:118302 3.1 164.7 1.0
C6B H:118302 3.1 164.7 1.0
CD2 H:TRP250 4.3 156.4 1.0
C3B H:118302 4.3 164.7 1.0
CG H:TRP250 4.3 156.4 1.0
C3D H:118302 4.4 164.7 1.0
C3C H:118302 4.4 164.7 1.0
C5D H:118302 4.4 164.7 1.0
C3A H:118302 4.4 164.7 1.0
C5A H:118302 4.4 164.7 1.0
C5C H:118302 4.4 164.7 1.0
CE3 H:TRP250 4.4 156.4 1.0
C5B H:118302 4.4 164.7 1.0
CB H:TRP250 4.5 156.4 1.0
CE2 H:TRP250 4.9 156.4 1.0
C4B H:118302 4.9 164.7 1.0
C4D H:118302 4.9 164.7 1.0
C4C H:118302 4.9 164.7 1.0
C4A H:118302 4.9 164.7 1.0
CD1 H:TRP250 4.9 156.4 1.0

Reference:

Y.Yang, C.Liu, W.Shi, D.G.Schatz, Y.Hu, B.Liu. Structural Visualization of Bacterial Multidrug-Activated Transcription To Be Published.
Page generated: Sat Apr 17 17:14:16 2021

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