Antimony in PDB 6xl5: Cryo-Em Structure of Ecmrr-Rnap-Promoter Open Complex (Ecmrr-Rpo)

All present enzymatic activity of Cryo-Em Structure of Ecmrr-Rnap-Promoter Open Complex (Ecmrr-Rpo):
2.7.7.6;

The structure of Cryo-Em Structure of Ecmrr-Rnap-Promoter Open Complex (Ecmrr-Rpo) also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Zinc	(Zn)	2 atoms

The binding sites of Antimony atom in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Open Complex (Ecmrr-Rpo) (pdb code 6xl5). This binding sites where shown within 5.0 Angstroms radius around Antimony atom.
In total 2 binding sites of Antimony where determined in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Open Complex (Ecmrr-Rpo), PDB code: 6xl5:
Jump to Antimony binding site number: 1; 2;

Antimony binding site 1 out of 2 in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Open Complex (Ecmrr-Rpo)


Mono view


Stereo pair view

A full contact list of Antimony with other atoms in the Sb binding site number 1 of Cryo-Em Structure of Ecmrr-Rnap-Promoter Open Complex (Ecmrr-Rpo) within 5.0Å range: probe atom residue distance (Å) B Occ G:Sb302 b:177.2 occ:1.00 SB G:118302 0.0 177.2 1.0 C1B G:118302 2.1 177.2 1.0 C1A G:118302 2.1 177.2 1.0 C1D G:118302 2.1 177.2 1.0 C1C G:118302 2.1 177.2 1.0 C2B G:118302 3.0 177.2 1.0 C2A G:118302 3.1 177.2 1.0 C6D G:118302 3.1 177.2 1.0 C2C G:118302 3.1 177.2 1.0 C6A G:118302 3.1 177.2 1.0 C2D G:118302 3.1 177.2 1.0 C6C G:118302 3.1 177.2 1.0 C6B G:118302 3.1 177.2 1.0 CD2 G:TRP250 4.3 170.7 1.0 C3B G:118302 4.3 177.2 1.0 C3A G:118302 4.4 177.2 1.0 C5D G:118302 4.4 177.2 1.0 C5A G:118302 4.4 177.2 1.0 C3D G:118302 4.4 177.2 1.0 C3C G:118302 4.4 177.2 1.0 C5C G:118302 4.4 177.2 1.0 CE3 G:TRP250 4.4 170.7 1.0 C5B G:118302 4.4 177.2 1.0 CG G:TRP250 4.6 170.7 1.0 CE2 G:TRP250 4.7 170.7 1.0 CZ3 G:TRP250 4.8 170.7 1.0 C4B G:118302 4.9 177.2 1.0 C4A G:118302 4.9 177.2 1.0 C4D G:118302 4.9 177.2 1.0 C4C G:118302 4.9 177.2 1.0 CB G:TRP250 5.0 170.7 1.0

Antimony binding site 2 out of 2 in the Cryo-Em Structure of Ecmrr-Rnap-Promoter Open Complex (Ecmrr-Rpo)


Mono view


Stereo pair view

A full contact list of Antimony with other atoms in the Sb binding site number 2 of Cryo-Em Structure of Ecmrr-Rnap-Promoter Open Complex (Ecmrr-Rpo) within 5.0Å range: probe atom residue distance (Å) B Occ H:Sb302 b:164.7 occ:1.00 SB H:118302 0.0 164.7 1.0 C1B H:118302 2.1 164.7 1.0 C1D H:118302 2.1 164.7 1.0 C1C H:118302 2.1 164.7 1.0 C1A H:118302 2.1 164.7 1.0 C2B H:118302 3.0 164.7 1.0 C2C H:118302 3.1 164.7 1.0 C2D H:118302 3.1 164.7 1.0 C6D H:118302 3.1 164.7 1.0 C2A H:118302 3.1 164.7 1.0 C6A H:118302 3.1 164.7 1.0 C6C H:118302 3.1 164.7 1.0 C6B H:118302 3.1 164.7 1.0 CD2 H:TRP250 4.3 156.4 1.0 C3B H:118302 4.3 164.7 1.0 CG H:TRP250 4.3 156.4 1.0 C3D H:118302 4.4 164.7 1.0 C3C H:118302 4.4 164.7 1.0 C5D H:118302 4.4 164.7 1.0 C3A H:118302 4.4 164.7 1.0 C5A H:118302 4.4 164.7 1.0 C5C H:118302 4.4 164.7 1.0 CE3 H:TRP250 4.4 156.4 1.0 C5B H:118302 4.4 164.7 1.0 CB H:TRP250 4.5 156.4 1.0 CE2 H:TRP250 4.9 156.4 1.0 C4B H:118302 4.9 164.7 1.0 C4D H:118302 4.9 164.7 1.0 C4C H:118302 4.9 164.7 1.0 C4A H:118302 4.9 164.7 1.0 CD1 H:TRP250 4.9 156.4 1.0

Y.Yang, C.Liu, W.Shi, D.G.Schatz, Y.Hu, B.Liu. Structural Visualization of Bacterial Multidrug-Activated Transcription To Be Published.