Chemical elements
  Antimony
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    PDB 1exi-2xqa
      1exi
      1f48
      2w0h
      2xqa

Antimony in the structure of Crystal Structure of Transcription Activator Bmrr, From B. Subtilis, Bound to 21 Base Pair Bmr Operator and Tpsb (pdb 1exi)






The binding sites of Antimony atom in the structure of Crystal Structure of Transcription Activator Bmrr, From B. Subtilis, Bound to 21 Base Pair Bmr Operator and Tpsb (pdb code 1exi). This binding sites where shown with 5.0 Angstroms radius around Antimony atom.
The 1exi structure was solved by E.E.ZHELEZNOVA-HELDWEIN, R.G.BRENNAN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)16.0-3.1
Space groupP4322
a (A)110.150
b (A)110.150
c (A)144.590
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)n/a
Rfree (%)n/a


Antimony Binding Sites:

Antimony binding site 1 out of 2 in 1exi


Antimony binding site 1 out of 2 in 1exi
Click to enlarge
stereopicture of Antimony binding site 1 out of 2 in 1exi
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Antimony in the PDB 1exi. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Antimony atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Pro144, A: Phe224, A: 118502,

conact list:


AtomAtomDistance (A)
SbO A:Pro1444.84
SbCE2 A:Phe2244.71
SbCZ A:Phe2244.65
SbC2D A:1185022.83
SbC2C A:1185022.88
SbC5D A:1185024.05
SbC3D A:1185024.09
SbC1B A:1185021.99
SbC6B A:1185022.94
SbC3B A:1185024.30
SbC3C A:1185024.18
SbC6D A:1185022.74
SbC5A A:1185023.95
SbC2A A:1185022.75
SbC1D A:1185021.81
SbC4A A:1185024.49
SbC4B A:1185024.82
SbC3A A:1185024.01
SbC4D A:1185024.58
SbC4C A:1185024.69
SbC5C A:1185024.16
SbC2B A:1185023.00
SbC6C A:1185022.84
SbSB A:1185020.00
SbC6A A:1185022.68
SbC5B A:1185024.28
SbC1A A:1185021.74
SbC1C A:1185021.88

interactive model:


Antimony binding site 2 out of 2 in 1exi


Antimony binding site 2 out of 2 in 1exi
Click to enlarge
stereopicture of Antimony binding site 2 out of 2 in 1exi
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Antimony in the PDB 1exi. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Antimony atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Tyr5, A: Tyr35, A: 118503,

conact list:


AtomAtomDistance (A)
SbCE2 A:Tyr54.67
SbCE2 A:Tyr354.85
SbC2D A:1185032.90
SbC2C A:1185032.99
SbC5D A:1185034.12
SbC3D A:1185034.16
SbC1B A:1185031.85
SbC6B A:1185032.81
SbC3B A:1185034.11
SbC3C A:1185034.29
SbC6D A:1185032.83
SbC5A A:1185034.17
SbC2A A:1185032.91
SbC1D A:1185031.88
SbC4A A:1185034.70
SbC4B A:1185034.61
SbC3A A:1185034.20
SbC4D A:1185034.65
SbC4C A:1185034.78
SbC5C A:1185034.23
SbC2B A:1185032.85
SbC6C A:1185032.92
SbSB A:1185030.00
SbC6A A:1185032.85
SbC5B A:1185034.09
SbC1A A:1185031.90
SbC1C A:1185031.99

interactive model:




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