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Antimony in PDB 1exi: Crystal Structure of Transcription Activator Bmrr, From B. Subtilis, Bound to 21 Base Pair Bmr Operator and Tpsb

Protein crystallography data

The structure of Crystal Structure of Transcription Activator Bmrr, From B. Subtilis, Bound to 21 Base Pair Bmr Operator and Tpsb, PDB code: 1exi was solved by E.E.Zheleznova-Heldwein, R.G.Brennan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 16.00 / 3.12
Space group P 43 2 2
Cell size a, b, c (Å), α, β, γ (°) 110.150, 110.150, 144.590, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Antimony Binding Sites:

The binding sites of Antimony atom in the Crystal Structure of Transcription Activator Bmrr, From B. Subtilis, Bound to 21 Base Pair Bmr Operator and Tpsb (pdb code 1exi). This binding sites where shown within 5.0 Angstroms radius around Antimony atom.
In total 2 binding sites of Antimony where determined in the Crystal Structure of Transcription Activator Bmrr, From B. Subtilis, Bound to 21 Base Pair Bmr Operator and Tpsb, PDB code: 1exi:
Jump to Antimony binding site number: 1; 2;

Antimony binding site 1 out of 2 in 1exi

Go back to Antimony Binding Sites List in 1exi
Antimony binding site 1 out of 2 in the Crystal Structure of Transcription Activator Bmrr, From B. Subtilis, Bound to 21 Base Pair Bmr Operator and Tpsb


Mono view


Stereo pair view

A full contact list of Antimony with other atoms in the Sb binding site number 1 of Crystal Structure of Transcription Activator Bmrr, From B. Subtilis, Bound to 21 Base Pair Bmr Operator and Tpsb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sb502

b:27.7
occ:0.50
SB A:118502 0.0 27.7 0.5
C1A A:118502 1.7 20.0 0.5
C1D A:118502 1.8 25.7 0.5
C1C A:118502 1.9 25.2 0.5
C1B A:118502 2.0 26.7 0.5
C6A A:118502 2.7 20.0 0.5
C6D A:118502 2.7 20.0 0.5
C2A A:118502 2.7 20.0 0.5
C2D A:118502 2.8 24.8 0.5
C6C A:118502 2.8 20.0 0.5
C2C A:118502 2.9 20.0 0.5
C6B A:118502 2.9 20.0 0.5
C2B A:118502 3.0 27.6 0.5
C5A A:118502 3.9 20.0 0.5
C3A A:118502 4.0 20.0 0.5
C5D A:118502 4.0 20.0 0.5
C3D A:118502 4.1 20.9 0.5
C5C A:118502 4.2 20.0 0.5
C3C A:118502 4.2 20.0 0.5
C5B A:118502 4.3 21.3 0.5
C3B A:118502 4.3 20.0 0.5
C4A A:118502 4.5 21.7 0.5
C4D A:118502 4.6 20.0 0.5
CZ A:PHE224 4.6 59.1 1.0
C4C A:118502 4.7 25.9 0.5
CE2 A:PHE224 4.7 60.8 1.0
C4B A:118502 4.8 21.8 0.5
O A:PRO144 4.8 46.7 1.0

Antimony binding site 2 out of 2 in 1exi

Go back to Antimony Binding Sites List in 1exi
Antimony binding site 2 out of 2 in the Crystal Structure of Transcription Activator Bmrr, From B. Subtilis, Bound to 21 Base Pair Bmr Operator and Tpsb


Mono view


Stereo pair view

A full contact list of Antimony with other atoms in the Sb binding site number 2 of Crystal Structure of Transcription Activator Bmrr, From B. Subtilis, Bound to 21 Base Pair Bmr Operator and Tpsb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sb503

b:70.0
occ:1.00
SB A:118503 0.0 70.0 1.0
C1B A:118503 1.8 66.5 1.0
C1D A:118503 1.9 74.4 1.0
C1A A:118503 1.9 76.5 1.0
C1C A:118503 2.0 74.5 1.0
C6B A:118503 2.8 66.0 1.0
C6D A:118503 2.8 80.7 1.0
C6A A:118503 2.9 82.1 1.0
C2B A:118503 2.9 65.0 1.0
C2D A:118503 2.9 77.2 1.0
C2A A:118503 2.9 85.6 1.0
C6C A:118503 2.9 79.0 1.0
C2C A:118503 3.0 79.9 1.0
C5B A:118503 4.1 68.0 1.0
C3B A:118503 4.1 63.7 1.0
C5D A:118503 4.1 84.0 1.0
C3D A:118503 4.2 79.2 1.0
C5A A:118503 4.2 87.1 1.0
C3A A:118503 4.2 88.8 1.0
C5C A:118503 4.2 83.7 1.0
C3C A:118503 4.3 81.3 1.0
C4B A:118503 4.6 64.3 1.0
C4D A:118503 4.6 81.2 1.0
CE2 A:TYR5 4.7 68.2 1.0
C4A A:118503 4.7 87.2 1.0
C4C A:118503 4.8 81.6 1.0
CE2 A:TYR35 4.9 41.7 1.0

Reference:

E.E.Heldwein, R.G.Brennan. Crystal Structure of the Transcription Activator Bmrr Bound to Dna and A Drug. Nature V. 409 378 2001.
ISSN: ISSN 0028-0836
PubMed: 11201751
DOI: 10.1038/35053138
Page generated: Fri Sep 25 14:36:38 2020
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